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Shuangxi Ren's Homepage

Personal News
My son, Yanqi Ren, was born in the afternoon at May 17, 1999.

Bioinformatics News
I have developed a new software called "Lark", which can analyse the cDNA sequence automatically at a very high performance.

Basecalling
Vector , repeat and mitochondrial sequence remove
EST analysis: EST can be sorted into gene, est and novel classes according the standard used at Chinese National Human Genome Center at Shanghai.
Which is 2-3 times faster than the commercial software we are used to do the same thing and more effective.

Introduction

I am now employed by Chinese National Human Genome Center at Shanghai.
Research field: Endocrine cDNA research and Microbial genomic research
Interest: write programer with perl etc.
email: sxren@163.net or ren-shuangxi@usa.net
Add: 315 Guoshoujing Rd

Shuangxi Ren's WWW link

Quick jump to the following topics:

Proteins db | 3D structure db | 2D-PAGE & MS db | DNA/RNA db | Carbohydrates db | Organisms specific db | Genes/proteins specific db | Phylogenetics db | Patents | References | Dict., primers & nomenclat. | Biol. soft. & db catalogs | Gateways | Biol. journals & publishers | Biol. societies | Biocomputing servers | Biotech. companies | Bioinformatics companies | Java in BioMol | Misc. sci. & med. ref. sites | Misc. general ref. sites | News | Computing | Recreational | Miscellanous

Biolinks

	Protein and associated topics databases
SWISS-PROT - SWISS-PROT annotated protein sequence db PROSITE - PROSITE dictionary of protein sites and patterns BLOCKS - BLOCKS db DOMO - Protein domain db (Automatically generated) Pfam - Protein families db (HMM derived) [Mirror at Sanger] PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) PROTOMAP - An automatic hierarchical classification of SWISS-PROT proteins SBASE - SBASE domain db Kabat - Kabat db of protein of immunological interest PMD - Protein Mutation db DIP - Db of Interacting Proteins PRESAGE - Collaborative Db of experimental data on proteins
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Protein and associated topics databases

SWISS-PROT - SWISS-PROT annotated protein sequence db
PROSITE - PROSITE dictionary of protein sites and patterns
BLOCKS - BLOCKS db
DOMO - Protein domain db (Automatically generated)
Pfam - Protein families db (HMM derived) [Mirror at Sanger]
PRINTS - Protein Motif fingerprint db
ProDom - Protein domain db (Automatically generated)
PROTOMAP - An automatic hierarchical classification of SWISS-PROT proteins
SBASE - SBASE domain db
Kabat - Kabat db of protein of immunological interest
PMD - Protein Mutation db
DIP - Db of Interacting Proteins
PRESAGE - Collaborative Db of experimental data on proteins

	Protein 3D structure and associated topics databases
PDB - Protein Data Bank [Mirrors in EBI \| Australia \| Israel] BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [Mirror at USA \| Israel \| Australia] Mol_R_Us - Molecule R Us, browser for PDB BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server ReLiBase - Receptor/ligand complexes db [Mirror in USA] TOPS - Topology cartoons diagrams CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD)) SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules BioImage - Biological image db (contains imaging data on macromolecules)
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Protein 3D structure and associated topics databases

PDB - Protein Data Bank [Mirrors in EBI | Australia | Israel]
BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy
SWISS-MODEL Repository - Automatically generated protein models db
ModBase - Db of comparative protein structure models
CATH - UCL BSM structural classification of proteins
SCOP - Structural classification of proteins [Mirror at USA | Israel | Australia]
Mol_R_Us - Molecule R Us, browser for PDB
BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server
ReLiBase - Receptor/ligand complexes db [Mirror in USA]
TOPS - Topology cartoons diagrams
CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD))

SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules
BioImage - Biological image db (contains imaging data on macromolecules)

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	Protein 2D-PAGE and MS databases
WORLD-2DPAGE - A complete index of 2D-PAGE db and servers Phoretix links - Phoretix page of links to 2D gel db MassBank - Protein Mass Spectrometric db (under construction)

	Nucleotide and associated topics databases
EMBL - EMBL Nucleotide sequence db (EBI) Genbank - GenBank Nucleotide Sequence db (NCBI) DDBJ - DNA Data Bank of Japan GSDB - Genomic Sequence db dbEST - dbEST (Expressed Sequence Tags) db (NCBI) [Mirror at EBI] dbSTS - dbSTS (Sequence Tagged Sites) db (NCBI) [Mirror atEBI] NDB - Nucleic Acid Databank (3D structures) [Mirror at EBI] BNASDB - Nucleic acid structure db from University of Pune AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA sequences db CUTG - Codon usage db EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] RDP - Ribosomal db Project gRNAs db - Guide RNA db PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db sRNA db - Small RNA db SSU rRNA - Small ribosomal subunit db LSU rRNA - Large ribosomal subunit db 5S rRNA - 5S ribosomal RNA db tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of Bayreuth uRNADB - uRNA db RNA editing - RNA editing site RNAmod db - RNA modification db dbSNP - Single Nucleotide Polymorphism db TelDB - Multimedia Telomere Resource TRADAT - TRAnscription Databases and Analysis Tools Viroids compilation - Small circular RNAs db (viroid and viroid-like) MPDB - Molecular probe db OPD - Oligonucleotide probe db PCR - PCR primers db VectorDB - Vector sequence db
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Nucleotide and associated topics databases

EMBL - EMBL Nucleotide sequence db (EBI)
Genbank - GenBank Nucleotide Sequence db (NCBI)
DDBJ - DNA Data Bank of Japan
GSDB - Genomic Sequence db
dbEST - dbEST (Expressed Sequence Tags) db (NCBI) [Mirror at EBI]
dbSTS - dbSTS (Sequence Tagged Sites) db (NCBI) [Mirror atEBI]

NDB - Nucleic Acid Databank (3D structures) [Mirror at EBI]
BNASDB - Nucleic acid structure db from University of Pune

AsDb - Aberrant Splicing db
ACUTS - Ancient conserved untranslated DNA sequences db
CUTG - Codon usage db
EPD - Eukaryotic Promoter db
HOVERGEN - Homologous Vertebrate Genes db
IMGT - ImMunoGeneTics db [Mirror at EBI]
RDP - Ribosomal db Project
gRNAs db - Guide RNA db
PLACE - Plant cis-acting regulatory DNA elements db
PlantCARE - Plant cis-acting regulatory DNA elements db
sRNA db - Small RNA db
SSU rRNA - Small ribosomal subunit db
LSU rRNA - Large ribosomal subunit db
5S rRNA - 5S ribosomal RNA db
tmRNA Website
tmRDB - tmRNA dB
tRNA - tRNA compilation from the University of Bayreuth
uRNADB - uRNA db
RNA editing - RNA editing site
RNAmod db - RNA modification db
dbSNP - Single Nucleotide Polymorphism db
TelDB - Multimedia Telomere Resource
TRADAT - TRAnscription Databases and Analysis Tools
Viroids compilation - Small circular RNAs db (viroid and viroid-like)

MPDB - Molecular probe db
OPD - Oligonucleotide probe db
PCR - PCR primers db
VectorDB - Vector sequence db

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	Carbohydrates resources
CarbBank - Complex Carbohydrate Structure Database (CCSD) TGN - The Glycoscience Network CARBHYD - Carbohydrate information WWW sites Monosacharide browser - Space filling Fischer projection for monosaccharides

Human
	Species specific databases
OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneClinics - Medical genetics knowledge base GDB - Genome Data Base GeneCards - Db integrating information on human genes HGMD - Human Gene Mutation db TIGR HGI - TIGR Human Gene Index Hs UniGene - Human transcripts in GenBank (EST clusters) STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs) GenLink - Human genetics resource GENOTK - Human cDNA db CGAP - Cancer Genes Anatomy Program Chr1 - Human chromosome 1 at Columbia Chr3 - Human chromosome 3 db Chr7 - Human chromosome 7 db Chr9 - Human chromosome 9 db GTC Chr10 data - GTC Human chromosome 10 data 11DB - Human chromosome 11 db at Imperial College (U.K.) Chr13 - Human chromosome 13 db at Columbia Chr16 LANL - Human chromosome 16 db at LANL Chr16 TIGR - Human chromosome 16 db at TIGR Chr17 UDB - Unified db for Human chromosome 17 at Weizmann (Israel) Chr17 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 17 Chr18 - Human chromosome 18 at Boston Children's Hospital Chr18 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 18 Chr19 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 19 Chr20 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 20 Chr21 at Tokyo Univ. - Human chromosome 21 Sequence Map from the University of Tokyo Chr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute Chr21 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 21 Chr22 at HGC - Human genome center for chromosome 22 Chr22 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 22 ChrX SWISS-PROT list - Links to SWISS-PROT entries from human chromosome X IXDB - Integrated X chromosome db ChrY SWISS-PROT list - Links to SWISS-PROT entries from human chromosome Y
Vertebrates
OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes MGD) [Mirrors in Australia \| Israel \| UK \| Japan] TIGR MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST clusters) RatMAP - Rat genome db BovBASE - Bovine genome db (in UK) BOVMAP - Bovine genome db (in France) Ark-Cat - Cat genome db HorseBASE - Horse genome db DGP - Dog Genome Project PigBASE - Pig genome db SheepBASE - Sheep genome db (also known as SheepMap) [Mirror in UK] ChickGBASE - Chicken genome db Fugu - HGMP Resource Centre FUGU Project Medakafish - Mekada fish (Oryzias latipes) server Ark-Tilapia - Tilapia mossambica genome db The fish net - Zebrafish server
Mitochondrion
MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear genes) MITOMAP - Human mitochondrial genome db MmtDB - Metazoa mitochondrial DNA variants db MitBASE - Integrated mitochondrial DNA db MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis HvrBase - Primates mtDNA control region sequences compilation
Insects
Drosophila SWISS-PROT list - Links to Drosophila SWISS-PROT entries FlyBase - Drosophila genetic and molecular db [Mirror at EBI] FlyView - Drosophila image db GIFTS - Gene Interactions in the Fly Trans-World Server Mosquito Genomics
Invertebrates
C.elegans WWW server - at UTSW AceDb - Caenorhabditis elegans db C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins C.elegans EST - C.elegans EST db from Japan (Yuji Kohara's group) C.elegans SWISS-PROT list - Links to C.elegans SWISS-PROT entries DictyDb - Dictyostelium discoideum db Dicty_cDB - Dictyostelium discoideum cDNA project Cone shells Web site LGN - Leishmania Genome Network MAD - Malaria Antigen db Malaria - WHO - Malaria db (from WHO) P.falciparum Sanger - P.falciparum genome project at Sanger P.falciparum - Plasmodium falciparum Gene Sequence Tag project Trypanosoma brucei genome project kDNA - Kinetoplast Minicircle Sequence db
Plants
NAL - AGIS - Access to many plant genome databases at the National Agricultural Library Mendel - Plant gene nomenclature database from CPGN AAtDB - Arabidopsis thaliana genome db TIGR At - TIGR Arabidopsis thaliana db Beanref - Beans genome db and other resources CottonDB - Cotton genome db MaizeDb - Maize genome db INRA Maize - INRA Maize genome db RGP - Rice Genome Research Program Soybase - Soybean genome db Soybase metabolic db - Metabolic subset of the soybean genome db Dendrome - Forest trees genome db
Fungi
Yeast SWISS-PROT list - Links to S.cerevisiae WWW sites and to SWISS-PROT entries SGD - Saccharomyces genome db YPD - Yeast protein db MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis Yeast snoRNA - Yeast small nucleolar RNAs db Aspergillus web site C.albicans SWISS-PROT list - Links to C.albicans WWW sites and to SWISS-PROT entries Candida albicans - Candida albicans server at the Univ. of Minnesota NGP - Neurospora genome project S.pombe SWISS-PROT list - Links to S.pombe WWW sites and to SWISS-PROT entries S.pombe NIH - Fission yeast (S.pombe) server at the NIH Phycomyces Web site - Resource site for scientists working on Phycomyces FGSC - Fungal Genetics Stock Center FGR - Fungal Genome Resource
Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature MDB - TIGR Microbial db HOBACGEN - Homologous Bacterial Genes E.coli SWISS-PROT list - Links to E.coli WWW sites and to SWISS-PROT entries EcoWeb / EcoGene - Very comprehensive E.coli db ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism GenProtEC - E.coli genes and gene products Colibri - E.coli genome db from Pasteur Insitute ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ B.subtilis SWISS-PROT list - Links to B.subtilis WWW sites and to SWISS-PROT entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db [Mirror in Japan] Micado - Microbial advanced db (B.subtilis + E.coli) (previously known as MadBase) BSORF - Japanese server on B.subtilis B.pertussis - Bordetella pertussis genome WWW site BbDB - TIGR Borrelia burgdorferi genome db C.acetobutylicum - GTC Clostridium acetobutylicum data C.jejuni - Campylobacter jejuni genome WWW site H.influenzae SWISS-PROT list - Links to H.influenzae WWW sites and to SWISS-PROT entries HiDB - TIGR H.influenzae genome db HIDC - H.influenzae db collection H.pylori SWISS-PROT list - Links to H.pylori WWW sites and to SWISS-PROT entries HpDB - TIGR Helicobacter pylori genome db MycDB - Mycobacterium db M.leprae - GTC Mycobacterium leprae data M.tuberculosis at GTC - GTC Mycobacterium tuberculosis data TubercuList - Mycobacterium tuberculosis H37Rv genome db M.tuberculosis at Sanger - Sanger Centre M.tuberculosis H37Rv genome project M.genitalium SWISS-PROT list - Links to M.genitalium SWISS-PROT entries MgDB - TIGR Mycoplasma genitalium genome db M.pneumoniae - Mycoplasma pneumoniae genome project P.aeruginosa - Pseudomonas aeruginosa genome project Rhizobium pNGR234a SWISS-PROT list - Links to Rhizobium plasmid pNGR234a SWISS-PROT entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.prowazekii - Rickettsia prowazekii strain Madrid E genome project S.typhimurium SWISS-PROT list - Links to S.typhimurium SWISS-PROT entries S.pyogenes - Streptococcus pyogenes strain M1 genome project CyanoBase - Synechocystis PCC 6803 db TpDB - TIGR Treponema pallidum genome db X.fastidosa - Xylella fastidosa genome WWW site Y.pestis - Yersinia pestis genome WWW site
Archebacteria
AfDB - TIGR Archaeoglobus fulgidus genome db M.jannaschii SWISS-PROT list - Links to M.jannaschii SWISS-PROT entries MjDB - TIGR Methanococcus jannaschii genome db M.thermoautotrophicum - Methanobacterium thermoautotrophicum genome db OT3 - Pyrococcus horikoshii OT3 db SGP - Sulfolobus acidocaldarius genome project
Viruses
All the virology on the WWW - links to virology WWW servers by David M. Sander ICTVdB - Universal virus taxonomy db AVIS - Animal Virus Information System Plants Viruses Online - Information on plant viruses HIV - HIV and related species db HPV - HPV (papillomaviruses) db Picornavirus - Picornavirus home page and access to db DOGS - Database of genome sizes
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	Gene(s)/protein(s) specific databases/resources
AAA - AAA family of ATPases server Acetylcholinesterases ADB - Albinism db (Mutations in human genes causing albinism) ALDH - Aldehyde dehydrogenase gene superfamily db Aminoacyl-tRNA synthetases in SWISS-PROT - List of aminoacyl-tRNA synthetases in SWISS-PROT AARSDB - Aminoacyl-tRNA synthetases db Allergens in SWISS-PROT - Nomenclature and index of allergens in SWISS-PROT Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II) AMSdb - Antimicrobial sequences db Antimicrobial Peptide Web Site ARR - Androgen receptor resource AR mutations - Human androgen receptor mutation db Antibody resource page - Links to antibody related Web resources Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies TFII - Basal transcription factors Blood group antigens in SWISS-PROT BCGD - Breast cancer genes db from MBCR BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) EF-hand CaBP - EF-hand calcium-binding proteins db CANSITE - Signal Transduction's Web CAZy - Carbohydrate-Active enZYmes Web site CBS domain CD antigens in SWISS-PROT - Nomenclature for surface proteins of human leucocytes (CD) CD antigens in PROW - Database on information about CD antigens CD antigens - Table of CD antigens designations CD40Lbase - Human CD40 ligand mutation db Chaperonin - Information on GroEL and GroES chaperonins COL1/3 mutation - Human Type I and III collagen mutation db Conotoxins - Information on conotoxins from a Web site on cone shells CFTR mutation - Human cystic fibrosis mutation db (CFTR) Cytokines Web - Structure and function of cytokines and their receptors COPE - Cytokines On-line Pathfinder Encyclopedia [Mirror in Israel] dbCFC - Cytokine family cDNA db R&D Systems' Cytokine Source Book DPInteract - DNA-Proteins interactions db EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy) ENZYME - Enzymes nomenclature db Worthington enzyme manual Eph - Eph receptor tyrosine Kinases and their ligands (ephrins) resource EpoDB - Erythropoiesis gene expression db (Epo GED) ESTHER - Esterases and alpha/beta hydrolase enzymes Modules - Extracellular proteins modules (domains) KMeyeDB - Eye disease genes db FVII mutation - Human Factor VII mutation db HAMSTeRS - Human Factor VIII mutation db (Haemophilia A) HAeMB - Human Factor IX mutation db (Haemophilia B) FAD-dependent pyridine nucleotide oxidoreductases FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome) Flavodoxins G6PD - Human G6PD deficiency resource Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia) GRBase - Gene regulation db Globin - Globin gene server Glucoamylases Glycosyl hydrolases in SWISS-PROT - Nomenclature and index of glycosyl hydrolases in SWISS-PROT 7TM in SWISS-PROT - List of G protein coupled receptors in SWISS-PROT GCRDb - G protein coupled receptors db GPCRDB - G protein coupled receptors db (7TM) at EMBL ORDB - Olfactory receptor db GRAP - G protein coupled receptors point mutation db GRR - Glucocorticoid receptor resource Glycosyltransferases - A guide to cloned glycosyltransferases GnRH - Gonadotropin-releasing hormones (GnRH) family GyrB - GyrB protein Yeast RNA helicases HEXAdb - Human Hexosaminidase A mutation db (Tay-sachs disease) Histone - Histones db Histo - Histocompatibility components server HIVdb - HIV protease db HotMolecBase - Molecules (mainly proteins) that are promising targets for medical applications Homeobox - Homeobox domain proteins resource HOX-Pro - Homeobox genes db Hox proteins in SWISS-PROT - Vertebrate homeotic Hox proteins: nomenclature and index of SWISS-PROT entries Labial - Homeobox genes, labial family HSP100 - HSP100/ClpAB family of chaperones IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db InBase - Inteins db from NEB Integrins ICN - The Ion Channel Network KEGG - Kyoto Encyclopedia of Genes and Genomes Kinesin - Kinesin motor proteins Klotho - Biochemical compounds declarative db L1CAM mutation - Human L1CAM mutation db LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LGIC - Ligand Gated Ion Channel subunit db MDB - Metalloprotein Site Database and Browser Metallothioneins in SWISS-PROT - Nomenclature and index of metallothioneins in SWISS-PROT MT - Metallothioneins MHCPEP - MHC binding peptides db Mitochondrial carriers pages from Nelson's lab MRR - Mineralocorticoid receptor resource Mutator - Transposases, Mutator family MutBase - Mutation spectra db (Db on mutants of several bacterial and mammalian genes) MutS - MutS family Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db Neurotrophic factors OTCase - Human ornithine transcarbamylase (OTCase) website O-GlycBase - O-glycosylation sites db P450 pages from Nelson's lab P450 - Directory of P450-containing systems IARC p53 db - IARC db of somatic p53 mutations p53 mutation db - University of Tokyo p53 mutation db Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human PAH mutation db PAX6 mutation - Human PAX6 mutation db PhosphoBase - Phosphorylation sites db PDE - Phosphodiesterases Peroxidases Plant Peroxidases Peptidases in SWISS-PROT - Nomenclature and index of peptidases in SWISS-PROT MEROPS - Peptidase db Prolysis - Proteases and inhibitors server Proteolysis for Fun and Profit PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db PKR - Protein Kinase Resource PatBase - P-type ATPase db PPDB - Phosphoprotein db Prion - Prion and prion disease web site Proteoglycans RB1base - Human retinoblastoma-associated protein mutation db RecA - RecA protein REBASE - Restriction enzymes and methylases db Restriction enzymes/methylases in SWISS-PROT - List of restriction enzymes and methylases in SWISS-PROT RetNet - Retinal Information Network Ribosomal proteins in SWISS-PROT - Families and index of ribosomal proteins in SWISS-PROT RNase P - Ribonuclease P db SPAD - Signaling pathway db CSNDB - Cell Signaling Networks db SRPDB - Signal Recognition Particle db SNF2 - SNF2 family TRR - Thyroid hormone receptors resource Topoisomerases - Type I and II topoisomerases TRANSFAC - Transcription factors db TSC2 - Cardiff-Rotterdam TS db (Tuberin = TSC2 mutation db) TGDB - Tumor gene db UDP Glucuronosyltransferases V BASE - Directory of human V gene sequences (Immunoglobulin germline variable region) VDRR - Vitamin D receptor resource VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WD-repeat - WD-repeat proteins family WIT - 'What is There' metabolic db WormPep - C.elegans proteins db WRN - Human WRN mutation db (Warner disease) WT1 mutation - Human WT1 mutation db
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Gene(s)/protein(s) specific databases/resources

AAA - AAA family of ATPases server
Acetylcholinesterases
ADB - Albinism db (Mutations in human genes causing albinism)
ALDH - Aldehyde dehydrogenase gene superfamily db
Aminoacyl-tRNA synthetases in SWISS-PROT - List of aminoacyl-tRNA synthetases in SWISS-PROT
AARSDB - Aminoacyl-tRNA synthetases db
Allergens in SWISS-PROT - Nomenclature and index of allergens in SWISS-PROT
Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II)
AMSdb - Antimicrobial sequences db
Antimicrobial Peptide Web Site
ARR - Androgen receptor resource
AR mutations - Human androgen receptor mutation db
Antibody resource page - Links to antibody related Web resources
Asthma and Allergy gene db
BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies
TFII - Basal transcription factors
Blood group antigens in SWISS-PROT
BCGD - Breast cancer genes db from MBCR
BTKbase - Human BTK mutation db (X-linked agammaglobulinemia)
EF-hand CaBP - EF-hand calcium-binding proteins db
CANSITE - Signal Transduction's Web
CAZy - Carbohydrate-Active enZYmes Web site
CBS domain
CD antigens in SWISS-PROT - Nomenclature for surface proteins of human leucocytes (CD)
CD antigens in PROW - Database on information about CD antigens
CD antigens - Table of CD antigens designations
CD40Lbase - Human CD40 ligand mutation db
Chaperonin - Information on GroEL and GroES chaperonins
COL1/3 mutation - Human Type I and III collagen mutation db
Conotoxins - Information on conotoxins from a Web site on cone shells
CFTR mutation - Human cystic fibrosis mutation db (CFTR)
Cytokines Web - Structure and function of cytokines and their receptors
COPE - Cytokines On-line Pathfinder Encyclopedia [Mirror in Israel]
dbCFC - Cytokine family cDNA db
R&D Systems' Cytokine Source Book
DPInteract - DNA-Proteins interactions db
EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy)
ENZYME - Enzymes nomenclature db
Worthington enzyme manual
Eph - Eph receptor tyrosine Kinases and their ligands (ephrins) resource
EpoDB - Erythropoiesis gene expression db (Epo GED)
ESTHER - Esterases and alpha/beta hydrolase enzymes
Modules - Extracellular proteins modules (domains)
KMeyeDB - Eye disease genes db
FVII mutation - Human Factor VII mutation db
HAMSTeRS - Human Factor VIII mutation db (Haemophilia A)
HAeMB - Human Factor IX mutation db (Haemophilia B)
FAD-dependent pyridine nucleotide oxidoreductases
FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome)
Flavodoxins
G6PD - Human G6PD deficiency resource
Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia)
GRBase - Gene regulation db
Globin - Globin gene server
Glucoamylases
Glycosyl hydrolases in SWISS-PROT - Nomenclature and index of glycosyl hydrolases in SWISS-PROT
7TM in SWISS-PROT - List of G protein coupled receptors in SWISS-PROT
GCRDb - G protein coupled receptors db
GPCRDB - G protein coupled receptors db (7TM) at EMBL
ORDB - Olfactory receptor db
GRAP - G protein coupled receptors point mutation db
GRR - Glucocorticoid receptor resource
Glycosyltransferases - A guide to cloned glycosyltransferases
GnRH - Gonadotropin-releasing hormones (GnRH) family
GyrB - GyrB protein
Yeast RNA helicases
HEXAdb - Human Hexosaminidase A mutation db (Tay-sachs disease)
Histone - Histones db
Histo - Histocompatibility components server
HIVdb - HIV protease db
HotMolecBase - Molecules (mainly proteins) that are promising targets for medical applications
Homeobox - Homeobox domain proteins resource
HOX-Pro - Homeobox genes db
Hox proteins in SWISS-PROT - Vertebrate homeotic Hox proteins: nomenclature and index of SWISS-PROT entries
Labial - Homeobox genes, labial family
HSP100 - HSP100/ClpAB family of chaperones
IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db
InBase - Inteins db from NEB
Integrins
ICN - The Ion Channel Network
KEGG - Kyoto Encyclopedia of Genes and Genomes
Kinesin - Kinesin motor proteins
Klotho - Biochemical compounds declarative db
L1CAM mutation - Human L1CAM mutation db
LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia)
LGIC - Ligand Gated Ion Channel subunit db
MDB - Metalloprotein Site Database and Browser
Metallothioneins in SWISS-PROT - Nomenclature and index of metallothioneins in SWISS-PROT
MT - Metallothioneins
MHCPEP - MHC binding peptides db
Mitochondrial carriers pages from Nelson's lab
MRR - Mineralocorticoid receptor resource
Mutator - Transposases, Mutator family
MutBase - Mutation spectra db (Db on mutants of several bacterial and mammalian genes)
MutS - MutS family
Neuromuscular diseases web site
NCL - Neuronal Ceroid Lipofuscinoses mutation db
Neurotrophic factors
OTCase - Human ornithine transcarbamylase (OTCase) website
O-GlycBase - O-glycosylation sites db
P450 pages from Nelson's lab
P450 - Directory of P450-containing systems
IARC p53 db - IARC db of somatic p53 mutations
p53 mutation db - University of Tokyo p53 mutation db
Germline p53 mutation db - University of Prague db of germline p53 mutations
PAHdb - Human PAH mutation db
PAX6 mutation - Human PAX6 mutation db
PhosphoBase - Phosphorylation sites db
PDE - Phosphodiesterases
Peroxidases
Plant Peroxidases
Peptidases in SWISS-PROT - Nomenclature and index of peptidases in SWISS-PROT
MEROPS - Peptidase db
Prolysis - Proteases and inhibitors server
Proteolysis for Fun and Profit
PLACE - Plant cis-acting regulatory DNA elements db
PlantCARE - Plant cis-acting regulatory DNA elements db
PKR - Protein Kinase Resource
PatBase - P-type ATPase db
PPDB - Phosphoprotein db
Prion - Prion and prion disease web site
Proteoglycans
RB1base - Human retinoblastoma-associated protein mutation db
RecA - RecA protein
REBASE - Restriction enzymes and methylases db
Restriction enzymes/methylases in SWISS-PROT - List of restriction enzymes and methylases in SWISS-PROT
RetNet - Retinal Information Network
Ribosomal proteins in SWISS-PROT - Families and index of ribosomal proteins in SWISS-PROT
RNase P - Ribonuclease P db
SPAD - Signaling pathway db
CSNDB - Cell Signaling Networks db
SRPDB - Signal Recognition Particle db
SNF2 - SNF2 family
TRR - Thyroid hormone receptors resource
Topoisomerases - Type I and II topoisomerases
TRANSFAC - Transcription factors db
TSC2 - Cardiff-Rotterdam TS db (Tuberin = TSC2 mutation db)
TGDB - Tumor gene db
UDP Glucuronosyltransferases
V BASE - Directory of human V gene sequences (Immunoglobulin germline variable region)
VDRR - Vitamin D receptor resource
VMD2 mutation - Human VMD2 mutation db
vWF mutation - Human von Willebrand factor (vWF) mutation db
WD-repeat - WD-repeat proteins family
WIT - 'What is There' metabolic db
WormPep - C.elegans proteins db
WRN - Human WRN mutation db (Warner disease)
WT1 mutation - Human WT1 mutation db

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	Phylogenetics databases and resources
TreeBASE - Relational db of phylogenetic information The Tree of life - Collection of WWW pages on organisms RDP - Ribosomal db Project ICB - Identification and Classification of Bacteria

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	Patents databases
DPD - DNA Patent db Ag Patents - Agricultural Biotechnology patents from the USDA USPTO patent db - USA Patent and Trademark Office patent db Esp@cenet - Patent information database from the European Patent Office (worldwide coverage)

	References (bibliographic databases)
PubMed Medline server Grateful Med - NLM access to Medline + other ref. db AGRICOLA - AGRICultural OnLine Access; ref. db from NAL Article@INIST - Scientific and Technical Information Institute articles and monographs db PRF/LITDB - Protein Research Foundation Literature db (Japan) Korean Journals Abstract db UnCoverWeb - Search in UnCover SeqAnalRef - Sequence analysis bibliographic references
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References (bibliographic databases)

PubMed Medline server
Grateful Med - NLM access to Medline + other ref. db
AGRICOLA - AGRICultural OnLine Access; ref. db from NAL
Article@INIST - Scientific and Technical Information Institute articles and monographs db
PRF/LITDB - Protein Research Foundation Literature db (Japan)
Korean Journals Abstract db
UnCoverWeb - Search in UnCover

SeqAnalRef - Sequence analysis bibliographic references

	Dictionaries, primers, courses, nomenclature, etc.
BioABACUS - Biotechnology ABbreviation and ACronym Uncovering Service BioTech dictionary of science and biotechnology DCB - Dictionary of cell biology by Julian Dow AAnP - IUPAC-IUBMB nomenclature for amino acids and peptides Amino acid properties - Physico and chemical information on amino acids Amino acids 2 - Another information page on amino acids (from Berlin Free Univ.) Carbohydrates - IUPAC-IUBMB nomenclature for carbohydrates Genetic codes - List of non-standard genetic codes from NCBI Genetic code Viewer - Genetic code viewer at EBI Glossary of Biochemistry and Molecular Biology - by David M. Glick Primer on molecular genetics - from the US Department of Energy Protease protocols - methods to cleave protein sequences Sequence similarity searches primer - from Keith Robison / Harvard Pedestrian guide to analysing sequence databases - from Rost and Schneider / EMBL Weight matrices for sequence similarity scoring - from David Wheeler / MBCR Biocomputing courses resource list - Syllabi for a variety of courses and tutorials on Bioinformatics (from VSNS BCD) Biocomputing tutorials - EMBnet Biocomputing tutorials BioComputing Hypertext Coursebook - from VSNS BCD Homology modelling course - from the EMBL Tutorial on secondary structure prediction - from Harry Mangalam / UC Irvine Introduction to Glycolysis - from Leeds University Molecular biology protocols - from NWFSC Molecular biology protocols - from MBS (Molecular Biology Shortcuts) Graphics Gallery - Access Excellence (Genentech) Biotechnology graphics gallery Abbreviations of chemical compounds List of nomenclature related references for proteins - from SWISS-PROT HUGO nomenclature committee JCBN - IUPAC-IUB Joint commission on Biochemical Nomenclature (JCBN) BIOSIS glossary of nomenclature terms in zoology Nobel Foundation Website The Nobel prize Internet Archive NCBI Taxonomy BIOSIS Codes of Nomenclature for the naming of organisms BIOSIS Taxonomy and Nomenclature List of Bacterial Names with Standing in Nomenclature ISIS - International Species Information System Species 2000 - Project to provide in an electronic form the names and taxonomy of all known species
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Dictionaries, primers, courses, nomenclature, etc.

BioABACUS - Biotechnology ABbreviation and ACronym Uncovering Service
BioTech dictionary of science and biotechnology
DCB - Dictionary of cell biology by Julian Dow

AAnP - IUPAC-IUBMB nomenclature for amino acids and peptides
Amino acid properties - Physico and chemical information on amino acids
Amino acids 2 - Another information page on amino acids (from Berlin Free Univ.)
Carbohydrates - IUPAC-IUBMB nomenclature for carbohydrates
Genetic codes - List of non-standard genetic codes from NCBI
Genetic code Viewer - Genetic code viewer at EBI
Glossary of Biochemistry and Molecular Biology - by David M. Glick
Primer on molecular genetics - from the US Department of Energy
Protease protocols - methods to cleave protein sequences
Sequence similarity searches primer - from Keith Robison / Harvard
Pedestrian guide to analysing sequence databases - from Rost and Schneider / EMBL
Weight matrices for sequence similarity scoring - from David Wheeler / MBCR
Biocomputing courses resource list - Syllabi for a variety of courses and tutorials on Bioinformatics (from VSNS BCD)
Biocomputing tutorials - EMBnet Biocomputing tutorials
BioComputing Hypertext Coursebook - from VSNS BCD
Homology modelling course - from the EMBL
Tutorial on secondary structure prediction - from Harry Mangalam / UC Irvine
Introduction to Glycolysis - from Leeds University
Molecular biology protocols - from NWFSC
Molecular biology protocols - from MBS (Molecular Biology Shortcuts)
Graphics Gallery - Access Excellence (Genentech) Biotechnology graphics gallery
Abbreviations of chemical compounds
List of nomenclature related references for proteins - from SWISS-PROT
HUGO nomenclature committee
JCBN - IUPAC-IUB Joint commission on Biochemical Nomenclature (JCBN)
BIOSIS glossary of nomenclature terms in zoology

Nobel Foundation Website
The Nobel prize Internet Archive

NCBI Taxonomy
BIOSIS Codes of Nomenclature for the naming of organisms
BIOSIS Taxonomy and Nomenclature
List of Bacterial Names with Standing in Nomenclature
ISIS - International Species Information System
Species 2000 - Project to provide in an electronic form the names and taxonomy of all known species

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	Biological software and databases catalog servers
BioCatalog - The BioCatalog at EBI Yellow BAGI - Bio Access Guide to the Internet at Houston University Software libray from Genamics.com dbCAT - Databases catalog at INFOBIOGEN MBDL - Molecular Biology Database List

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	Gateways to Life Sciences resources
Bioplanet BioView Molecular Biology Gateway from Horizon Press Macromol Online MBS - Molecular Biology Shortcuts

Resources that links to journals home pages
	Biological journals and publishers
SWISS-PROT journals list - Provides direct links to most biological journals home pages Biochemistry and Molecular Biology Journals - Jim Beasley page of biological journals Medical Journal Online - List of journals from the University of Texas Research Medical Library Science journals db from the Korean Basic Science Institute Journal links from the Singapore bioinformatics center Journal index from Genamics.com Journal index from Horizon Scientific Press MedSite Navigator medical journals list MedSite Navigator research journals list HUM-MOLGEN - HUM-MOLGEN communication forum home page for journals TOC MJF - Medical Journal Finder Medline full text lists - List of journals in Medline with Web sites ISI Journal lists - Institute for Scientific Information list of journals ISSN - International Standard Serial Number organization
Publishers
AACR - American Association for Cancer Reasearch publications Allen Press, Inc. AMA - American Medical Association publications APS - American Physiological Society publications ACS - American Chemistry Society publications AP - Academic Press ASM - American Society of Microbiology publications Annual Reviews Bentham Science Publishers Bioline Publications BioScientifica Ltd Birkhauser Verlag Basel Blackwell Science BMJ - British Medical Journal publishing group Cell Press Churchill Livingstone COB - Company of Biologists Ltd CRC Press, Inc. CSHL - Cold Spring Harbor Laboratory Press CSIRO - CSIRO Publishing CUP - Cambridge University Press CJP - Carden Jennings Publishing Co. Ltd Marcel Dekker, Inc. Elsevier Science [Mirror in the US] FASEB publications G+B - Gordon and Breach Publishing Group Gustav Fischer Verlag HighWire Press Horizon Scientific Press Humana Press, Inc. IOS Press IR - Inter-Research Science Publisher Karger AG KAP - Kluwer Academic Publishers Editrice Kurtis JL - John Libbey Eurotext LW&W - Lippincott Williams and Wilkins Mary Ann Liebert Masson Mosby Munksgaard IAPC NAUKA - NAUKA International Academic Publishing Company (Russia) NRC Research Press OUP - Oxford University Press Parthenon Publishing Group Pharmaceutical Press Plenum Press Portland Press Rockfeller University Press Sheffield Academic Press SGM - Society for General Microbiology publications SIR - SIR Publishing Slack, Inc. Spektrum Akademischer Verlag Springer-Verlag Stockton Press Swets & Zeitlinger T&F - Taylor & Francis Ltd [Mirror in the U.K.] Thieme University of Chicago Press VSP - VSP International Science Publishers VZN - Verlag der Zeitschrift fur Naturforschung W de G - Walter de Gruyter and Co. W.B. Saunders Co. Wiley - John Wiley and Sons [Mirror in the U.K.] Wiley-VCH
Bioinformatics journals and newsletters
Bioinformatics Gene-Combis [No longer published as a separate journal] ISB - In Silico Biology BioInformer - EBI's newsletter embnet.news - EMBnet's newsletter NCBI Newsletter PDB Quaterly Newsletter B6 - Bulletin d'information du Service d'Informatique Scientifique (Pasteur Institute / FR) GCG Transcript - GCG software newsletter BioInform - Global Bioinformatics new service BITS - Bioinformatics Information Technology and Systems
Genomic newsletters
Human Genome News Gene Letter GeneticUpdates FGN - Fungal Genetics Newsletter [Mirror in U.K.] Rice Genome Newsletter WBG - Worm Breeder's Gazette Weeds World - International Electronic Arabidopsis newsletter [Mirror at Stanford (USA)]
Miscellaneous
IJC - Internet Journal of Chemistry Plant Gene Register
Biotechnology trade journals
BioCentury GEN - Genetic Engineering News Amersham Life Science News
General science journals
Discover magazine Nature [Mirror in the USA] New Scientist La Recherche Science Scientific American Breakthrough! HMS Beagle The Scientist ScienceDaily Magazine Science News Online CNN Sci-Tech - CNN Science and Technology
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	Some biological societies and organizations
APS - American Peptide Society ASCB - American Society for Cell Biology ATCC - American Type Culture Collection Biochemical Society BSA - Botanical Society of America CSBMCB - Canadian Society of Biochemistry and Molecular and Cell Biology DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen EMBO - European Molecular Biology Organization ESEB - European Society for Evolutionary Biology ESHG - European Society of Human Genetics FASEB - Federation of American Societies for Experimental Biology FEBS - Federation of European Biochemistry Societies FGM - Foundation for Genetics Medicine HUGO - HUman Genome Organization IUBMB - International Union of Biochemistry and Molecular Biology IUPAC - International Union of Pure and Applied Chemistry JBS - Japanese Biochemical Society MSA - Mycological Society of America PRF - Protein Research Foundation SDB - Society for Developmental Biology SGM - Society for General Microbiology SICB - Society for Integrative and Comparative Biology DOI - Digital Object Identifier foundation Bioperl Project bioWidgets - BioWidgets Consortium ISCB - International Society for Computational Biology OMF - Open Molecule Foundation OMG LSR - Object Management Group Life Science Research task force
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Some biological societies and organizations

APS - American Peptide Society
ASCB - American Society for Cell Biology
ATCC - American Type Culture Collection
Biochemical Society
BSA - Botanical Society of America
CSBMCB - Canadian Society of Biochemistry and Molecular and Cell Biology
DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen
EMBO - European Molecular Biology Organization
ESEB - European Society for Evolutionary Biology
ESHG - European Society of Human Genetics
FASEB - Federation of American Societies for Experimental Biology
FEBS - Federation of European Biochemistry Societies
FGM - Foundation for Genetics Medicine
HUGO - HUman Genome Organization
IUBMB - International Union of Biochemistry and Molecular Biology
IUPAC - International Union of Pure and Applied Chemistry
JBS - Japanese Biochemical Society
MSA - Mycological Society of America
PRF - Protein Research Foundation
SDB - Society for Developmental Biology
SGM - Society for General Microbiology
SICB - Society for Integrative and Comparative Biology

DOI - Digital Object Identifier foundation

Bioperl Project
bioWidgets - BioWidgets Consortium
ISCB - International Society for Computational Biology
OMF - Open Molecule Foundation
OMG LSR - Object Management Group Life Science Research task force

Europe
	Biocomputing servers homepages
EBI - European Bioinformatics Institute EMBL - EMBL Biocomputing unit SIB - Swiss Institute of Bioinformatics EMBnet CH - Swiss EMBnet node ISREC - ISREC bioinformatics group (Lausanne / Swizerland) CBRG - Computational Biochemistry Research Group (Zurich / Switzerland) INFOBIOGEN - GIS INFOBIOGEN; French EMBnet node ABI - Atelier BioInformatique (Marseille / FR) Genethon - Genethon (Evry / FR) GeneStream - Institut de Génétique Humaine (Montpellier / FR) GENOSCOPE - Centre National de Séquencage (Evry / FR) IGS - Information Génétique et Structurale (Structural and Genetic Information Laboratory) (Marseille / FR) Pasteur - Institut Pasteur (Paris / FR) PBIL - Pole Bio-informatique Lyonnais (Lyon / FR) DESS Informatique Appliquée a la Biologie SEQNET - SEQNET; U.K. EMBnet node Sanger - Sanger Centre (Hinxton / U.K.) HGMP - MRC HGMP Resource Centre (Hinxton / U.K.) Beowulf Genomics - Wellcome Trust genome sequencing initiative WWW site BMM - Biomolecular Modelling laboratory at ICRF (London / U.K.) RIO - Roslin Institute Online (U.K.) GeniusNet - DKFZ; Germany EMBnet node GSF AG BIODV - Software Development for Molecular Biology at the GSF Institut fuer Sauegetiergenetik GSC - Genome Sequencing Center (Iena / Germany) MIPS - Munich Information Centre for Protein Sequences (Germany) VSNS BCD - Virtual School of Natural Sciences Biocomputing Division from the University of Bielefeld (Germany) BCC - Vienna University Department for Biocomputing; Austria EMBnet node BEN - Belgium EMBnet node BIOBASE - Denmark EMBnet mode CBS - Center for Biological Sequence Analysis (Technical University of Denmark) CSC BioBox - CSC; Finland EMBnet node IMBB - Greece EMBnet node ABC - Agricultural Biotechnology Center (Budapest / Hungary) INCBI - Irish National Center for Bioinformatics; Ireland EMBnet node TigemNet - Telethon Institute of Genetics and Medicine Bioinformatics resources (Italy) CAOS/CAMM - Netherland EMBnet node BIO - Norwegian EMBnet node IBB - Institute of Biochemistry and Biophysics (Warsaw); Poland EMBnet node Pen - Portuguese EMBnet Node Belozersky Institute - Belozersky Institute (Moscow); Russia EMBnet node CNB - Centro Nacional de Biotecnologia; Spain EMBnet node BMC - BioMedical Centre at Uppsala; Sweden EMBnet node KISAC - Karolinska Institute (KI) Sequence analysis facility Bioserver - Biocomputing server at Bogacizi University (Turkey)
USA and Canada
NCBI - National Center for Biotechnology Information ABCC - Advanced Biomedical Computing Center at the NCI BCM HGC - Baylor College of Medicine Human Genome Center BDGP - Berkeley Drosophila Genome Project BioTech - BioTech biology/chemistry educational resource and research tool BIC - The Biotechnology Information Center BMERC - Biomolecular Engineering Research Center CBIL - Computational Biology and Informatics Laboratory at the University of Pennsylvania GSC - Genome Sequencing Center at Washington University HGP Columbia - Human Genome Project at Columbia University IBC - Washington University Institute for Biomedical Computing JHU - Johns Hopkins Bio-Informatics LANL - Los Alamos National Laboratory (LANL) center for human genome studies LBNL - Lawrence-Berkeley National Laboratory (LBNL) Human Genome informatics group MBCR - Molecular Biology Computational Resource at Baylor College of Medicine NCGR - National Center for Genome Resources NIH - NIH molecular biology SAGC - The San Antonio Genome Center TIGR - The Institute for Genome Research WICGR - Whitehead Institute Center for Genome Research CBR - Canadian Bioinformatics Resource BSC - Bioinformatics Supercomputing Centre
Asia
APBioNet - Asia-Pacific Bioinformatics network University of Pune (India) Bioinformatics Centre Japanese GenomeNet NIG - National Institute of Genetics of Japan KDRI - Kazusa DNA Research Institute CBI - Peking Center of Bioinformatics; Chinese EMBnet node PKUBIOS - Peking University Bioinformatics Server MICRO-NET - Microbial Information Network of China HKBIC - Hong Kong Bioinformatics Center BRIC - Biological Research Information Center (Korea) Biocomp - BioInformatics center of the National University of Singapore
Australia
APBioNet - Asia-Pacific Bioinformatics network ANGIS - Australian National Genomic Information Service ANU - Australian National University Bioinformatics APAF - Australian Proteome Analysis Facility
Others
Weizmann Bioinfo/BCU - Weizmann Institute of Science Bioinformatics and Biological Computing SANBI - South African BioInformatics Institute BDT - Base de Datos Tropical (Sao Paulo / Brazil) ICCB - International Center for Cooperation in Bioinformatics ICGEB - International Center for Genetic Engineering (Trieste / Italy)
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	Biotechnology and pharmaceutical companies
NBIF Biotechnology company registry Pharmaceutical Research and Manufacturers of America membership Bioportfolio - Gateways to biobusiness - Alpha-Beta Technology, Inc. Affymetrix, Inc. AlphaGene, Inc. Amersham Pharmacia Biotech Amgen ARIAD Pharmaceuticals, Inc. AS - Ares-Serono Astra Pharmaceuticals Atheris Laboratories SA Bayer Bio Balance, Inc. Biogen, Inc. Bio-Rad Laboratories, Inc. Biosystematica BTC - Biospecifics Technology Co. Celera Genomics Co. Centocor Clontech Laboratories, Inc. Cognetix, Inc. CuraGen Co. deCODE Genetics, Inc. Eli Lilly Enzon, Inc. EPI - Exelixis Pharmaceuticals, Inc. Fermentas Genaissance Pharmaceuticals, Inc. Genencor International Inc. Genentech, Inc. Genetics Institute GS - Genome Systems, Inc. Genomic Solutions, Inc. Genset Genzyme Co. Geron Co. Glaxo Wellcome Gryphon Sciences GTC - Genome Therapeutics Co. (Collaborative Research Inc.) HGS - Human Genome Sciences, Inc. Hoechst Hoechst Marion Roussel HRI - Helix Research Institute, Inc. Hybrigenics SA Hyseq, Inc. Incyte Pharmaceuticals, Inc. Invitrogen LSB - Large Scale Biology Co. LTI - Life Technologies, Inc. MetaXen LLC MPI - Millennium Pharmaceuticals, Inc. Millipore Co. Myriad Genetics, Inc. NEB - New England Biolabs, Inc. NGI - National Genetics Institute Novo Nordisk OGS - Oxford GlycoSciences Parke-Davis Pfizer, Inc. Pharmacia Biotech Pharmingen Phoretix Promega Co. Proteome, Inc. PSL - Proteome Systems Ltd ProZyme, Inc. QIAGEN GmbH Research Genetics, Inc. Roche Bioscience SB - SmithKline Beecham Synthelabo TopLab WITA - Wittmann Institute of Technology and Analysis of Biomolecules GmbH Worthington Biochemical Co. Xenometrix, Inc. 5 Prime->3 Prime, Inc.
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Biotechnology and pharmaceutical companies

NBIF Biotechnology company registry
Pharmaceutical Research and Manufacturers of America membership
Bioportfolio - Gateways to biobusiness

- Alpha-Beta Technology, Inc.
Affymetrix, Inc.
AlphaGene, Inc.
Amersham Pharmacia Biotech
Amgen
ARIAD Pharmaceuticals, Inc.
AS - Ares-Serono
Astra Pharmaceuticals
Atheris Laboratories SA
Bayer
Bio Balance, Inc.
Biogen, Inc.
Bio-Rad Laboratories, Inc.
Biosystematica
BTC - Biospecifics Technology Co.
Celera Genomics Co.
Centocor
Clontech Laboratories, Inc.
Cognetix, Inc.
CuraGen Co.
deCODE Genetics, Inc.
Eli Lilly
Enzon, Inc.
EPI - Exelixis Pharmaceuticals, Inc.
Fermentas
Genaissance Pharmaceuticals, Inc.
Genencor International Inc.
Genentech, Inc.
Genetics Institute
GS - Genome Systems, Inc.
Genomic Solutions, Inc.
Genset
Genzyme Co.
Geron Co.
Glaxo Wellcome
Gryphon Sciences
GTC - Genome Therapeutics Co. (Collaborative Research Inc.)
HGS - Human Genome Sciences, Inc.
Hoechst
Hoechst Marion Roussel
HRI - Helix Research Institute, Inc.
Hybrigenics SA
Hyseq, Inc.
Incyte Pharmaceuticals, Inc.
Invitrogen
LSB - Large Scale Biology Co.
LTI - Life Technologies, Inc.
MetaXen LLC
MPI - Millennium Pharmaceuticals, Inc.
Millipore Co.
Myriad Genetics, Inc.
NEB - New England Biolabs, Inc.
NGI - National Genetics Institute
Novo Nordisk
OGS - Oxford GlycoSciences
Parke-Davis
Pfizer, Inc.
Pharmacia Biotech
Pharmingen
Phoretix
Promega Co.
Proteome, Inc.
PSL - Proteome Systems Ltd
ProZyme, Inc.
QIAGEN GmbH
Research Genetics, Inc.
Roche Bioscience
SB - SmithKline Beecham
Synthelabo
TopLab
WITA - Wittmann Institute of Technology and Analysis of Biomolecules GmbH
Worthington Biochemical Co.
Xenometrix, Inc.
5 Prime->3 Prime, Inc.

	Bioinformatics companies
ACD - Advanced Chemistry Development, Inc. ApoCom, Inc. Base4 Bioinformatics BioDiscovery, Inc. Bioinformatics Solutions Ltd. Biomedical Computing, Inc. BIOSIS BIOSOFT BioTools, Inc. Caesar Software LLC Cogna Bioinformatics, Inc. Compugen [USA \| Israel] DGT- Digital Gene Technologies, Inc. DNA* - DNAStar EnCompass Bioinformatics Pty Ltd FQS - FQS Poland Sp. z.o.o. Genamics GeneBio - Geneva Bioinformatics SA GCG - Genetics Computer Group Gene Codes Co GeneData AG Gene-IT SA GENETYX - Software Development Co, GENETYX software Genomatix Software GmbH Genomica Geospiza, Inc. Hitachi - Hitachi USA Genetic Systems InforMax, Inc. Inpharmatica Lambda-Plus SA LION Bioscience AG MAG - Molecular Applications Group Magic Works GmbH Matrix Science Ltd MDL - MDL Information Systems, Inc. MSI - Molecular Simulations, Inc. NBI - National Biosciences Neomorphic Software, Inc. NetGenics Net-ID, Inc. OML - Oxford Molecular Group [Mirror in the USA] Pangea Systems, Inc. Paracel, Inc. PE Informatics - Perkin-Elmer Informatics PREMIER Biosoft International ProteoMetrics Scitech SGI - Silicon Graphics, Chemistry and Biological Sciences Socratix Systems, Inc. Spotfire, Inc. Synomics Ltd SBI - Structural Bioinformatics, Inc. Time Logic Bioinformatics Division Tripos Inc. WebGenetics
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Bioinformatics companies

ACD - Advanced Chemistry Development, Inc.
ApoCom, Inc.
Base4 Bioinformatics
BioDiscovery, Inc.
Bioinformatics Solutions Ltd.
Biomedical Computing, Inc.
BIOSIS
BIOSOFT
BioTools, Inc.
Caesar Software LLC
Cogna Bioinformatics, Inc.
Compugen [USA | Israel]
DGT- Digital Gene Technologies, Inc.
DNA* - DNAStar
EnCompass Bioinformatics Pty Ltd
FQS - FQS Poland Sp. z.o.o.
Genamics
GeneBio - Geneva Bioinformatics SA
GCG - Genetics Computer Group
Gene Codes Co
GeneData AG
Gene-IT SA
GENETYX - Software Development Co, GENETYX software
Genomatix Software GmbH
Genomica
Geospiza, Inc.
Hitachi - Hitachi USA Genetic Systems
InforMax, Inc.
Inpharmatica
Lambda-Plus SA
LION Bioscience AG
MAG - Molecular Applications Group
Magic Works GmbH
Matrix Science Ltd
MDL - MDL Information Systems, Inc.
MSI - Molecular Simulations, Inc.
NBI - National Biosciences
Neomorphic Software, Inc.
NetGenics
Net-ID, Inc.
OML - Oxford Molecular Group [Mirror in the USA]
Pangea Systems, Inc.
Paracel, Inc.
PE Informatics - Perkin-Elmer Informatics
PREMIER Biosoft International
ProteoMetrics
Scitech
SGI - Silicon Graphics, Chemistry and Biological Sciences
Socratix Systems, Inc.
Spotfire, Inc.
Synomics Ltd
SBI - Structural Bioinformatics, Inc.
Time Logic Bioinformatics Division
Tripos Inc.
WebGenetics

	BioMolecular Java applications and demos
JaMBW - Java-based Molecular Biology Workbench CINEMA - Interactive multiple alignment editor Java Ribosome - DNA to protein translation HelixWheel - Tools to represent a protein fragment as an helical wheel Shuffle - Randomly shuffle a sequence PDB3D - 3D molecule display Molecular Dynamics with Java DNA Primer Melt Calculator SStructView - RNA secondary structure viewer BioViews - Drosophila genome exploration tools Flies in your Java - Map display of Drosophila genes, aberrations, clones, etc.
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BioMolecular Java applications and demos

JaMBW - Java-based Molecular Biology Workbench

CINEMA - Interactive multiple alignment editor
Java Ribosome - DNA to protein translation
HelixWheel - Tools to represent a protein fragment as an helical wheel
Shuffle - Randomly shuffle a sequence
PDB3D - 3D molecule display
Molecular Dynamics with Java
DNA Primer Melt Calculator
SStructView - RNA secondary structure viewer
BioViews - Drosophila genome exploration tools
Flies in your Java - Map display of Drosophila genes, aberrations, clones, etc.

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	News
ABC CNN Reuter top stories summary Newsweek Time Magazine USA Today L'Hebdo - 'Webdo' Edipresse Le Temps International Herald Tribune Le Monde Diplomatique The New York Times Jerusalem Post Slate News.Com - Computer news Weather forecasts Excite NewsTracker - Service to search on-line news sources News Index - News search engine

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	Miscellanous
Gutenberg Project - Electronic full text version of classics Internet Bookshop Amazon.com - Earth's biggest bookstore Blue Mountains Arts - Electronics greeting cards mp3.com - MP3 audio files ITN - Internet Travel Network (Travel reservations and information)

Shuangxi Ren's WWW link

Biolinks

Other links